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Translate Logseq Knowledge Graph to Systems Biology Network Diagrams: Difference between revisions
Translate Logseq Knowledge Graph to Systems Biology Network Diagrams (view source)
Revision as of 06:37, 10 November 2022
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We can write biological statements using SBGN vocabulary (Activity Flow reference card) in Logseq and create knowledge graph. Later we should be able to import these statements to SBGN and create the network model using edge description (Activity Flow reference card) used in the knowledge graph. | We can write biological statements using SBGN vocabulary (Activity Flow reference card) in Logseq and create knowledge graph. Later we should be able to import these statements to SBGN and create the network model using edge description (Activity Flow reference card) used in the knowledge graph. | ||
[[File:SBGN Activity flow.png|center|thumb|560x560px|SBGN Activity flow reference card]] | [[File:SBGN Activity flow.png|center|thumb|560x560px|SBGN Activity flow reference card]] | ||
"Newt is a sample application for the web based library named ChiSE developed to visualize and edit the pathway models represented by process description (PD) and activity flow (AF) languages of SBGN or in simple interaction format (SIF)." https://github.com/iVis-at-Bilkent/newt | "Newt is a sample application for the web based library named ChiSE developed to visualize and edit the pathway models represented by process description (PD) and activity flow (AF) languages of SBGN or in simple interaction format (SIF)." https://github.com/iVis-at-Bilkent/newt | ||
[[File:GitHub - iVis-at-Bilkent-newt- A web application to visualize and edit pathway models.png|center|thumb|592x592px|GitHub - iVis-at-Bilkent/newt: A web application to visualize and edit pathway models]] | |||
At the moment we can do create network manually by [https://web.newteditor.org/ Newt Editor] webtool. | |||
[[File:Newt Editor 2.png|center|thumb|512x512px|Newt Editor]] | [[File:Newt Editor 2.png|center|thumb|512x512px|Newt Editor]] | ||