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Translate Logseq Knowledge Graph to Systems Biology Network Diagrams: Difference between revisions
Translate Logseq Knowledge Graph to Systems Biology Network Diagrams (view source)
Revision as of 06:34, 10 November 2022
, 06:34, 10 November 2022added more description
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[[File:LogSeq to SBGN.jpg|thumb|935x935px|LogSeq to SBGN]] | [[File:LogSeq to SBGN.jpg|thumb|935x935px|LogSeq to SBGN]] | ||
s | We can write biological statements using SBGN vocabulary (Activity Flow reference card) in Logseq and create knowledge graph. Later we should be able to import these statements to SBGN and create the network model using edge description (Activity Flow reference card) used in the knowledge graph. | ||
[[File:SBGN Activity flow.png|center|thumb|560x560px|SBGN Activity flow reference card]] | |||
At the moment we can do create network manually by [https://web.newteditor.org/ Newt Editor] webtool. | |||
"Newt is a sample application for the web based library named ChiSE developed to visualize and edit the pathway models represented by process description (PD) and activity flow (AF) languages of SBGN or in simple interaction format (SIF)." https://github.com/iVis-at-Bilkent/newt | |||
[[File:Newt Editor 2.png|center|thumb|512x512px|Newt Editor]] | |||
Let's say for e.g. we collated information on Logseq about how the glycolysis work, then we manualy draw this on [https://web.newteditor.org/ Newt Editor], later we can export the relationships using SBML for simulations. Like the same way we can import SBML files to this website to create network. So ideally what we should work here is how to collate curated information on LogSeq in a way we can export as SBML | |||
[[File:Newt Editor .png|center|thumb|532x532px|Newt Editor]] | |||
{{DEFAULTSORT:Translate Logseq Knowledge Graph to Systems Biology Network Diagrams}} | {{DEFAULTSORT:Translate Logseq Knowledge Graph to Systems Biology Network Diagrams}} | ||