Computable Graphs
| Computable Graphs | |
|---|---|
| Description | How to ground knowledge graphs (that can be used for prediction or computational simulation experiments and models) in the discourse and quantitative evidence in scientific literature? |
| Related Topics | Knowledge Graphs |
| Projects | Synthesis center for cell biology, Translate Logseq Knowledge Graph to Systems Biology Network Diagrams |
| Discord Channel | #computable-graphs |
| Facilitator | |
| Members | Aakanksha Naik, Dafna Shahaf, Belinda Mo, Akila Wijerathna-Yapa, Matthew Akamatsu, Michael Gartner, Joel Chan |
Facilitator/Point of Contact: Joel Chan
What
How to ground knowledge graphs (that can be used for prediction or computational simulation experiments and models) in the discourse of evidence in scientific literature? How to transition from unstructured literature to knowledge graphs and keep things updated with appropriate provenance for (un)certainty?
Discussion entry points
- Matthew Akamatsu https://discord.com/channels/1029514961782849607/1033091746139230238/1040212464631029822
Resources
- Simularium - https://simularium.allencell.org/
- Vivarium Collective - https://vivarium-collective.github.io/
Next Steps
- don't know if a joint project makes sense, but perhaps coordinated first prototypes of a bridge?
could use:
- someone with programming skills to implement a POC translation between a discourse graph and one of the specific modeling languages/ontologies