Akila Wijerathna-Yapa - Revision history

Jonny at 00:43, 12 November 2022

2022-11-12T00:43:39Z

← Older revision		Revision as of 00:43, 12 November 2022
Line 3:		Line 3:
	\|Affiliation=[https://www.plantsuccess.org/ ARC Centre of Excellence for Plant Success in Nature and Agriculture], [https://en.wikipedia.org/wiki/University_of_Queensland The University of Queensland]		\|Affiliation=[https://www.plantsuccess.org/ ARC Centre of Excellence for Plant Success in Nature and Agriculture], [https://en.wikipedia.org/wiki/University_of_Queensland The University of Queensland]
	\|Table Assignment=Table 2		\|Table Assignment=Table 2
	}}		}}
	{{Workshop Submission		{{Workshop Submission
	\|Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I look forward to learning how the community uses Computer-Supported tools for hypothesis and evidence synthesis for life science research.		\|Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I look forward to learning how the community uses Computer-Supported tools for hypothesis and evidence synthesis for life science research.

AWY: Add Links

2022-10-29T12:08:23Z

Add Links

← Older revision		Revision as of 12:08, 29 October 2022
Line 8:		Line 8:
	\|Frame=Practitioner		\|Frame=Practitioner
	\|Materials=I am interested in using prior knowledge for plant phenotypic prediction research in predictive breeding. Today we have a substantial understanding of the biology of how plant regulates their phenotypes—however, this information accumulated over the years and scattered. Therefore I am keen to build a knowledge network that mathematicians and computational modelers can use this knowledge network to develop algorithms to predict phenotypes.		\|Materials=I am interested in using prior knowledge for plant phenotypic prediction research in predictive breeding. Today we have a substantial understanding of the biology of how plant regulates their phenotypes—however, this information accumulated over the years and scattered. Therefore I am keen to build a knowledge network that mathematicians and computational modelers can use this knowledge network to develop algorithms to predict phenotypes.
	As a first challenge of the project, I have to bridge the gap between computational biologists and wet lab researchers to communicate biology to understand molecular physiological mechanisms. For this, I'm intended to use Systems Biology Graphical Notations. By joining CSCW 2022, I would like to learn how to use markdown-based note-taking Apps (i.e. LogSeq, Obsidian) to synthesize the knowledge and import it into Systems biology graphical notation markup language to create the network.		As a first challenge of the project, I have to bridge the gap between computational biologists and wet lab researchers to communicate biology to understand molecular physiological mechanisms. For this, I'm intended to use Systems Biology Graphical Notations. By joining CSCW 2022, I would like to learn how to use markdown-based note-taking Apps (i.e., [https://logseq.com/ LogSeq], [https://obsidian.md/ Obsidian], [https://roamresearch.com/ Roam Research]) to synthesize the knowledge and import it into [https://en.wikipedia.org/wiki/Systems_Biology_Graphical_Notation Systems biology graphical notation markup language] to create the network.
	\|Organizer Topics=Research Data, Graphs, Knowledge Network		\|Organizer Topics=Research Data, Knowledge Graphs, Knowledge Network, [https://sbgn.github.io/ Systems Biology Graphical Notation (SBGN)]
	}}		}}

AWY at 12:02, 29 October 2022

2022-10-29T12:02:53Z

← Older revision		Revision as of 12:02, 29 October 2022
Line 1:		Line 1:
	{{Participant		{{Participant
	\|Timezone=Australia/Brisbane (GMT+10:00/GMT+10:00)		\|Timezone=Australia/Brisbane (GMT+10:00/GMT+10:00)
	\|Affiliation=ARC Centre of Excellence for Plant Success, University of Queensland		\|Affiliation=[https://www.plantsuccess.org/ ARC Centre of Excellence for Plant Success in Nature and Agriculture], [https://en.wikipedia.org/wiki/University_of_Queensland The University of Queensland]
	\|Table Assignment=Table 2		\|Table Assignment=Table 2
	}}		}}
	{{Workshop Submission		{{Workshop Submission
	\|Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I ~~am looking~~ forward to learning how the community ~~is using~~ Computer-Supported tools for hypothesis and evidence synthesis for life science research.		\|Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I look forward to learning how the community uses Computer-Supported tools for hypothesis and evidence synthesis for life science research.
	\|Frame=Practitioner		\|Frame=Practitioner
	\|Materials=~~Attached~~		\|Materials=I am interested in using prior knowledge for plant phenotypic prediction research in predictive breeding. Today we have a substantial understanding of the biology of how plant regulates their phenotypes—however, this information accumulated over the years and scattered. Therefore I am keen to build a knowledge network that mathematicians and computational modelers can use this knowledge network to develop algorithms to predict phenotypes.
	\|Organizer Topics=Research Data, Graphs		As a first challenge of the project, I have to bridge the gap between computational biologists and wet lab researchers to communicate biology to understand molecular physiological mechanisms. For this, I'm intended to use Systems Biology Graphical Notations. By joining CSCW 2022, I would like to learn how to use markdown-based note-taking Apps (i.e. LogSeq, Obsidian) to synthesize the knowledge and import it into Systems biology graphical notation markup language to create the network.
			\|Organizer Topics=Research Data, Graphs, Knowledge Network
	}}		}}

Jonny at 21:23, 26 October 2022

2022-10-26T21:23:13Z

← Older revision		Revision as of 21:23, 26 October 2022
Line 1:		Line 1:
	{{Participant		{{Participant
	\|Timezone=		\|Timezone=Australia/Brisbane (GMT+10:00/GMT+10:00)
	\|Affiliation=		\|Affiliation=ARC Centre of Excellence for Plant Success, University of Queensland
	~~\|Projects=~~
	\|Table Assignment=Table 2		\|Table Assignment=Table 2
	}}		}}

Jonny at 20:56, 26 October 2022

2022-10-26T20:56:04Z

← Older revision		Revision as of 20:56, 26 October 2022
Line 1:		Line 1:
	{{Participant		{{Participant
	\|Timezone=~~America/Los Angeles (GMT−08:00/GMT−07:00)~~		\|Timezone=
	\|Affiliation=~~UCSF~~		\|Affiliation=
	\|Projects=~~node.js~~		\|Projects=
	\|Table Assignment=Table 2		\|Table Assignment=Table 2
	}}		}}

Jonny at 20:33, 26 October 2022

2022-10-26T20:33:36Z

← Older revision		Revision as of 20:33, 26 October 2022
Line 1:		Line 1:
	{{Participant		{{Participant
	\|Affiliation=~~ARC Centre of Excellence for Plant Success, University of Queensland~~		\|Timezone=America/Los Angeles (GMT−08:00/GMT−07:00)
			\|Affiliation=UCSF
			\|Projects=node.js
			\|Table Assignment=Table 2
	}}		}}
	{{Workshop Submission		{{Workshop Submission

Jonny: Created page with "{{Participant |Affiliation=ARC Centre of Excellence for Plant Success, University of Queensland }} {{Workshop Submission |Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I am looking forward to learning how the community is using Computer-Supported tools..."

2022-10-26T20:04:15Z

Created page with "{{Participant |Affiliation=ARC Centre of Excellence for Plant Success, University of Queensland }} {{Workshop Submission |Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I am looking forward to learning how the community is using Computer-Supported tools..."

New page

{{Participant
|Affiliation=ARC Centre of Excellence for Plant Success, University of Queensland
}}
{{Workshop Submission
|Interest=We use knowledge of networks, multidisciplinary hypothesis-driven mechanistic modeling, molecular plant physiology, genetics, and genomics approach to understand how plants regulate bud outgrowth and discover new network components that facilitate breeding. I am looking forward to learning how the community is using Computer-Supported tools for hypothesis and evidence synthesis for life science research.
|Frame=Practitioner
|Materials=Attached
|Organizer Topics=Research Data, Graphs
}}